Genome Meta Information: Arthrospira platensis C1 (GCA_000307915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000307915.1 | ||
| HOMD Taxon-ID | HMT-0229 | ||
| Species Name (in use by HOMD) | Arthrospira platensis | ||
| Organism Name (as deposited) | HMT-229 Arthrospira platensis C1 | ||
| Strain or Isolate | C1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira; s__Limnospira fusiformis |
||
| Sequencing Technology | Sanger; 454 GS FLX Titanium | ||
| Genome Coverage | 28 | ||
| Contigs |
|
||
| Total Sequence Length | 6,089,210 (bp) | ||
| GC Percentage | 46.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/307/915/GCA_000307915.1_ASM30791v1 | ||
| CDS | 5518 | ||
| Genes | 5802 | ||
| mRNA | 5802 | ||
| misc RNA | 233 | ||
| rRNA | 6 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.76 % | ||
| CheckM Completeness | 97.69 % | ||
| CheckM Contamination | 3.83 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM30791v1 |
| GenBank Assembly Accession | GCA_000307915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000307915.1 [NCBI] |
| BioSample | SAMN02470135 [NCBI] |
| BioProject | PRJNA67617 [NCBI] |
| Submitter | King Mongkuts University of Technology Thonburi, Thailand |
| Submission Date | 2013-12-19T13:09:59.290 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | AFXD01 |
| NCBI TaxID | 459495 |
| Isolation Source | |
| Geo Location | |
