Genome Meta Information: Selenomonas timonae F0429 (GCA_000318175.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000318175.2 | ||
| HOMD Taxon-ID | HMT-0138 | ||
| Species Name (in use by HOMD) | Selenomonas timonae | ||
| Organism Name (as deposited) | HMT-138 Selenomonas timonae F0429 | ||
| Strain or Isolate | F0429 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda; s__Centipeda timonae |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 161 | ||
| Contigs |
|
||
| Total Sequence Length | 2,384,529 (bp) | ||
| GC Percentage | 56.91 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/175/GCA_000318175.2_ASM31817v2 | ||
| CDS | 2247 | ||
| Genes | 2322 | ||
| mRNA | 2322 | ||
| misc RNA | 19 | ||
| rRNA | 3 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.32 % | ||
| CheckM Contamination | 0.05 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM31817v2 |
| GenBank Assembly Accession | GCA_000318175.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000318175.2 [NCBI] |
| BioSample | SAMN02436930 [NCBI] |
| BioProject | PRJNA80253 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:04:01.783 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AMEO01 |
| NCBI TaxID | 1127695 |
| Isolation Source | oral cavity |
| Geo Location | |
