Genome Meta Information: Neisseria sp. HMT-020 F0370 (GCA_000318235.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000318235.2 | ||
| HOMD Taxon-ID | HMT-0020 | ||
| Species Name (in use by HOMD) | Neisseria sp. HMT-020 | ||
| Organism Name (as deposited) | HMT-020 Neisseria sp. HMT-020 F0370 | ||
| Strain or Isolate | F0370 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria sp002237445 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 173 | ||
| Contigs |
|
||
| Total Sequence Length | 2,358,903 (bp) | ||
| GC Percentage | 58.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/235/GCA_000318235.2_ASM31823v2 | ||
| CDS | 2229 | ||
| Genes | 2291 | ||
| mRNA | 2291 | ||
| misc RNA | 17 | ||
| rRNA | 4 | ||
| tRNA | 40 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.59 % | ||
| CheckM Contamination | 1.42 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM31823v2 |
| GenBank Assembly Accession | GCA_000318235.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000318235.2 [NCBI] |
| BioSample | SAMN02436686 [NCBI] |
| BioProject | PRJNA80247 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:46.937 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AMER01 |
| NCBI TaxID | 1127694 |
| Isolation Source | oral cavity |
| Geo Location | |
