Genome Meta Information: Capnocytophaga periodontitidis F0382 (GCA_000318295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000318295.1 | ||
| HOMD Taxon-ID | HMT-0326 | ||
| Species Name (in use by HOMD) | Capnocytophaga periodontitidis | ||
| Organism Name (as deposited) | HMT-326 Capnocytophaga endodontalis F0382 | ||
| Strain or Isolate | F0382 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga periodontitidis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 509 | ||
| Contigs |
|
||
| Total Sequence Length | 3,218,123 (bp) | ||
| GC Percentage | 38.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/295/GCA_000318295.1_ASM31829v1 | ||
| CDS | 3039 | ||
| Genes | 3092 | ||
| mRNA | 3092 | ||
| misc RNA | 11 | ||
| rRNA | 3 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.99 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM31829v1 |
| GenBank Assembly Accession | GCA_000318295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000318295.1 [NCBI] |
| BioSample | SAMN02436687 [NCBI] |
| BioProject | PRJNA67197 [NCBI] |
| Submitter | Washington University Genome Center |
| Submission Date | 2013-12-04T15:03:47.013 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AMEU01 |
| NCBI TaxID | 1035193 |
| Isolation Source | oral cavity |
| Geo Location | |
