Genome Meta Information: Schaalia lingnae F0379 (GCA_000318335.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000318335.2 | ||
| HOMD Taxon-ID | HMT-0181 | ||
| Species Name (in use by HOMD) | Schaalia lingnae | ||
| Organism Name (as deposited) | HMT-181 Schaalia lingnae F0379 | ||
| Strain or Isolate | F0379 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia pyogenes_B |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 205 | ||
| Contigs |
|
||
| Total Sequence Length | 1,901,306 (bp) | ||
| GC Percentage | 56.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/335/GCA_000318335.2_ASM31833v2 | ||
| CDS | 1635 | ||
| Genes | 1694 | ||
| mRNA | 1694 | ||
| misc RNA | 7 | ||
| rRNA | 3 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 94.98 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM31833v2 |
| GenBank Assembly Accession | GCA_000318335.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000318335.2 [NCBI] |
| BioSample | SAMN02436933 [NCBI] |
| BioProject | PRJNA80239 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:04:02.060 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AMEW01 |
| NCBI TaxID | 1127690 |
| Isolation Source | oral cavity |
| Geo Location | |
