Genome Meta Information: Eggerthia catenaformis OT 569 (GCA_000340375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000340375.1 | ||
| HOMD Taxon-ID | HMT-0569 | ||
| Species Name (in use by HOMD) | Eggerthia catenaformis | ||
| Organism Name (as deposited) | HMT-569 Eggerthia catenaformis OT 569 | ||
| Strain or Isolate | OT 569 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Eggerthia; s__Eggerthia catenaformis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 400 | ||
| Contigs |
|
||
| Total Sequence Length | 1,945,158 (bp) | ||
| GC Percentage | 33.1 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/375/GCA_000340375.1_Lact_cate_OT_569_V1 | ||
| CDS | 1863 | ||
| Genes | 1958 | ||
| mRNA | 1958 | ||
| misc RNA | 31 | ||
| rRNA | 16 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.07 % | ||
| CheckM Completeness | 99.06 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Lact_cate_OT_569_V1 |
| GenBank Assembly Accession | GCA_000340375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000340375.1 [NCBI] |
| BioSample | SAMN02596729 [NCBI] |
| BioProject | PRJNA64881 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2014-01-27T09:48:47.550 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AGEJ01 |
| NCBI TaxID | 999415 |
| Isolation Source | |
| Geo Location | |
