Genome Meta Information: Streptococcus oralis AZ_3a (GCA_000344275.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000344275.1 | ||
| HOMD Taxon-ID | HMT-0071 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-071 Streptococcus oralis subsp. tigurinus AZ_3a | ||
| Strain or Isolate | AZ_3a | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_E |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 140 | ||
| Contigs |
|
||
| Total Sequence Length | 2,184,662 (bp) | ||
| GC Percentage | 40.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/344/275/GCA_000344275.1_Streptococcus_tigurinus_AZ_3a | ||
| CDS | 2136 | ||
| Genes | 2244 | ||
| mRNA | 2244 | ||
| misc RNA | 56 | ||
| rRNA | 4 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.68 % | ||
| CheckM Contamination | 1.84 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Streptococcus tigurinus AZ_3a |
| GenBank Assembly Accession | GCA_000344275.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000344275.1 [NCBI] |
| BioSample | SAMN02469808 [NCBI] |
| BioProject | PRJNA188401 [NCBI] |
| Submitter | Geneva University Hospitals |
| Submission Date | 2013-12-19T13:09:35.050 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AORU01 |
| NCBI TaxID | 1282664 |
| Isolation Source | blood culture |
| Geo Location | Switzerland |
