Genome Meta Information: Porphyromonas gingivalis JCVI SC001 (GCA_000380305.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000380305.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis JCVI SC001 | ||
| Strain or Isolate | JCVI SC001 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina GAII | ||
| Genome Coverage | 237 | ||
| Contigs |
|
||
| Total Sequence Length | 2,426,396 (bp) | ||
| GC Percentage | 48.91 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/380/305/GCA_000380305.1_PgingivalisJCVISC001v1.0 | ||
| CDS | 2093 | ||
| Genes | 2151 | ||
| mRNA | 2151 | ||
| misc RNA | 12 | ||
| rRNA | 3 | ||
| tRNA | 42 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.54 % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | PgingivalisJCVISC001v1.0 |
| GenBank Assembly Accession | GCA_000380305.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000380305.1 [NCBI] |
| BioSample | SAMN02436407 [NCBI] |
| BioProject | PRJNA167667 [NCBI] |
| Submitter | The J. Craig Venter Institute |
| Submission Date | 2013-12-04T14:28:21.873 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | APMB01 |
| NCBI TaxID | 1195243 |
| Isolation Source | biofilm in a hospital bathroom sink drain |
| Geo Location | |
