Genome Meta Information: Phocaeicola massiliensis DSM 17679 (GCA_000382445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000382445.1 | ||
| HOMD Taxon-ID | HMT-0976 | ||
| Species Name (in use by HOMD) | Phocaeicola massiliensis | ||
| Organism Name (as deposited) | HMT-976 Phocaeicola massiliensis DSM 17679 | ||
| Strain or Isolate | DSM 17679 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola massiliensis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 137 | ||
| Contigs |
|
||
| Total Sequence Length | 4,646,209 (bp) | ||
| GC Percentage | 43.7 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/382/445/GCA_000382445.1_Bact_mass_DSM_17679_V1 | ||
| CDS | 3955 | ||
| Genes | 4060 | ||
| mRNA | 4060 | ||
| misc RNA | 16 | ||
| rRNA | 20 | ||
| tRNA | 68 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 97.26 % | ||
| CheckM Contamination | 1.85 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Bact_mass_DSM_17679_V1 |
| GenBank Assembly Accession | GCA_000382445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000382445.1 [NCBI] |
| BioSample | SAMN02596944 [NCBI] |
| BioProject | PRJNA170352 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2014-01-27T09:48:59.823 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AQHY01 |
| NCBI TaxID | 1121098 |
| Isolation Source | |
| Geo Location | |
