Genome Meta Information: Lancefieldella sp. HMT-199 F0494 (GCA_000411555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000411555.1 | ||
| HOMD Taxon-ID | HMT-0199 | ||
| Species Name (in use by HOMD) | Lancefieldella sp. HMT-199 | ||
| Organism Name (as deposited) | HMT-199 Lancefieldella sp. HMT-199 F0494 | ||
| Strain or Isolate | F0494 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella; s__Lancefieldella sp000411555 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 142 | ||
| Contigs |
|
||
| Total Sequence Length | 1,665,560 (bp) | ||
| GC Percentage | 51.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/411/555/GCA_000411555.1_Atop_sp_oral_taxon_199_F0494_V1 | ||
| CDS | 1474 | ||
| Genes | 1539 | ||
| mRNA | 1539 | ||
| misc RNA | 6 | ||
| rRNA | 12 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.52 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Atop_sp_oral_taxon_199_F0494_V |
| GenBank Assembly Accession | GCA_000411555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000411555.1 [NCBI] |
| BioSample | SAMN02596982 [NCBI] |
| BioProject | PRJNA170346 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2014-01-27T09:49:02.047 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ATCH01 |
| NCBI TaxID | 1203602 |
| Isolation Source | |
| Geo Location | |
