Genome Meta Information: Lacticaseibacillus rhamnosus LOCK900 (GCA_000418475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000418475.1 | ||
| HOMD Taxon-ID | HMT-0749 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus rhamnosus | ||
| Organism Name (as deposited) | HMT-749 Lacticaseibacillus rhamnosus LOCK900 | ||
| Strain or Isolate | LOCK900 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus |
||
| Sequencing Technology | Sanger dideoxy sequencing; 454; Illumina | ||
| Genome Coverage | 81 | ||
| Contigs |
|
||
| Total Sequence Length | 2,883,376 (bp) | ||
| GC Percentage | 46.79 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/418/475/GCA_000418475.1_ASM41847v1 | ||
| CDS | 2650 | ||
| Genes | 2759 | ||
| mRNA | 2759 | ||
| misc RNA | 34 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.7 % | ||
| CheckM Completeness | 99.08 % | ||
| CheckM Contamination | 0.27 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM41847v1 |
| GenBank Assembly Accession | GCA_000418475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000418475.1 [NCBI] |
| BioSample | SAMN02603328 [NCBI] |
| BioProject | PRJNA196481 [NCBI] |
| Submitter | IBB PAS |
| Submission Date | 2014-01-30T11:19:49.553 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1316933 |
| Isolation Source | |
| Geo Location | |
