Genome Meta Information: Listeria monocytogenes N1-011A (GCA_000438685.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000438685.2 | ||
| HOMD Taxon-ID | HMT-0825 | ||
| Species Name (in use by HOMD) | Listeria monocytogenes | ||
| Organism Name (as deposited) | HMT-825 Listeria monocytogenes N1-011A | ||
| Strain or Isolate | N1-011A | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria; s__Listeria monocytogenes_B |
||
| Sequencing Technology | PacBio RS | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,243,301 (bp) | ||
| GC Percentage | 37.97 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/438/685/GCA_000438685.2_ASM43868v2 | ||
| CDS | 3219 | ||
| Genes | 3451 | ||
| mRNA | 3451 | ||
| misc RNA | 146 | ||
| rRNA | 18 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.51 % | ||
| CheckM Completeness | 98.43 % | ||
| CheckM Contamination | 0.44 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM43868v2 |
| GenBank Assembly Accession | GCA_000438685.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000438685.2 [NCBI] |
| BioSample | SAMN02203128 [NCBI] |
| BioProject | PRJNA203445 [NCBI] |
| Submitter | University of California at Davis |
| Submission Date | 2013-06-13T11:17:57.730 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1639 |
| Isolation Source | Environment |
| Geo Location | USA |
