Genome Meta Information: Streptococcus oralis 2426 (GCA_000442175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000442175.1 | ||
| HOMD Taxon-ID | HMT-0071 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-071 Streptococcus oralis subsp. tigurinus 2426 | ||
| Strain or Isolate | 2426 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_F |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 80 | ||
| Contigs |
|
||
| Total Sequence Length | 1,882,877 (bp) | ||
| GC Percentage | 40.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/442/175/GCA_000442175.1_2426.1 | ||
| CDS | 1834 | ||
| Genes | 1929 | ||
| mRNA | 1929 | ||
| misc RNA | 42 | ||
| rRNA | 5 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.33 % | ||
| CheckM Completeness | 96.24 % | ||
| CheckM Contamination | 0.6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 2426.1 |
| GenBank Assembly Accession | GCA_000442175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000442175.1 [NCBI] |
| BioSample | SAMN02469815 [NCBI] |
| BioProject | PRJNA202968 [NCBI] |
| Submitter | Geneva University Hospitals, Genomic Research Laboratory |
| Submission Date | 2013-12-19T13:09:35.536 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ASXA01 |
| NCBI TaxID | 1333865 |
| Isolation Source | prosthetic joint infection |
| Geo Location | Switzerland |
