Genome Meta Information: Peptidiphaga sp. HMT-183 F0552 (GCA_000466165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000466165.1 | ||
| HOMD Taxon-ID | HMT-0183 | ||
| Species Name (in use by HOMD) | Peptidiphaga sp. HMT-183 | ||
| Organism Name (as deposited) | HMT-183 Peptidiphaga sp. HMT-183 F0552 | ||
| Strain or Isolate | F0552 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Peptidiphaga; s__Peptidiphaga sp000466165 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 120.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,366,015 (bp) | ||
| GC Percentage | 67.84 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/165/GCA_000466165.1_ASM46616v1 | ||
| CDS | 1968 | ||
| Genes | 2026 | ||
| mRNA | 2026 | ||
| misc RNA | 6 | ||
| rRNA | 3 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.32 % | ||
| CheckM Contamination | 0.12 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46616v1 |
| GenBank Assembly Accession | GCA_000466165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000466165.1 [NCBI] |
| BioSample | SAMN02436889 [NCBI] |
| BioProject | PRJNA173932 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:58.610 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWSB01 |
| NCBI TaxID | 1227261 |
| Isolation Source | subgingival plaque biofilm of oral cavity |
| Geo Location | United Kingdom |
