Taxon Table | Genome Table
Genome Meta Information:
Schaalia
sp. HMT-172
F0311 (GCA_000466265.1)
| HOMD Genome-ID |
GCA_000466265.1
|
| HOMD Taxon-ID |
HMT-0172
|
| Species Name (in use by HOMD) |
Schaalia sp. HMT-172
|
| Organism Name (as deposited) |
HMT-172 Schaalia sp. HMT-172 F0311
|
| Strain or Isolate |
F0311
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;
s__Pauljensenia sp000466265 |
| Sequencing Technology |
Illumina
|
| Genome Coverage |
161
|
| Contigs |
Number of Contigs: 215
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,469,990 (bp) |
| GC Percentage |
66.59
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/265/GCA_000466265.1_ASM46626v1
|
| CDS |
2065
|
| Genes |
2126
|
| mRNA |
2126
|
| misc RNA |
9
|
| rRNA |
2
|
| tRNA |
49
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
99.49 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM46626v1
|
| GenBank Assembly Accession |
GCA_000466265.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000466265.1
[NCBI]
|
| BioSample |
SAMN02436818
[NCBI]
|
| BioProject |
PRJNA198883
[NCBI]
|
| Submitter |
Washington University
|
| Submission Date |
2013-12-04T15:03:54.487
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
AWSF01
|
| NCBI TaxID |
1321775
|
| Isolation Source |
oral cavity- mouth
|
| Geo Location |
|
