Genome Meta Information: Capnocytophaga sp. HMT-863 F0517 (GCA_000466425.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000466425.1 | ||
| HOMD Taxon-ID | HMT-0863 | ||
| Species Name (in use by HOMD) | Capnocytophaga sp. HMT-863 | ||
| Organism Name (as deposited) | HMT-863 Capnocytophaga sp. HMT-863 F0517 | ||
| Strain or Isolate | F0517 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga sp000466425 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 145 | ||
| Contigs |
|
||
| Total Sequence Length | 2,724,306 (bp) | ||
| GC Percentage | 41.81 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/425/GCA_000466425.1_ASM46642v1 | ||
| CDS | 2524 | ||
| Genes | 2579 | ||
| mRNA | 2579 | ||
| misc RNA | 8 | ||
| rRNA | 2 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.25 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46642v1 |
| GenBank Assembly Accession | GCA_000466425.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000466425.1 [NCBI] |
| BioSample | SAMN02436819 [NCBI] |
| BioProject | PRJNA173935 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:54.547 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWSR01 |
| NCBI TaxID | 1227266 |
| Isolation Source | supragingival plaque biofilm of a molar |
| Geo Location | USA |
