Genome Meta Information: Campylobacter concisus UNSWCS (GCA_000466685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000466685.1 | ||
| HOMD Taxon-ID | HMT-0433 | ||
| Species Name (in use by HOMD) | Campylobacter concisus | ||
| Organism Name (as deposited) | HMT-433 Campylobacter concisus clade-433 UNSWCS | ||
| Strain or Isolate | UNSWCS | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A; s__Campylobacter_A concisus_A |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,108,730 (bp) | ||
| GC Percentage | 39.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/685/GCA_000466685.1_UNSWCS | ||
| CDS | 2164 | ||
| Genes | 2213 | ||
| mRNA | 0 | ||
| misc RNA | 4 | ||
| rRNA | 2 | ||
| tRNA | 42 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.68 % | ||
| CheckM Completeness | 99.58 % | ||
| CheckM Contamination | 0.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | UNSWCS |
| GenBank Assembly Accession | GCA_000466685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000466685.1 [NCBI] |
| BioSample | SAMN02471190 [NCBI] |
| BioProject | PRJNA177555 [NCBI] |
| Submitter | The University of New South Wales |
| Submission Date | 2013-12-19T13:34:51.080 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ANNG01 |
| NCBI TaxID | 1242968 |
| Isolation Source | |
| Geo Location | |
