Genome Meta Information: Limosilactobacillus fermentum 3872 (GCA_000466785.3)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000466785.3 | ||
| HOMD Taxon-ID | HMT-0608 | ||
| Species Name (in use by HOMD) | Limosilactobacillus fermentum | ||
| Organism Name (as deposited) | HMT-608 Limosilactobacillus fermentum 3872 | ||
| Strain or Isolate | 3872 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus fermentum |
||
| Sequencing Technology | IonTorrent; PacBio | ||
| Genome Coverage | 116.61 | ||
| Contigs |
|
||
| Total Sequence Length | 2,330,492 (bp) | ||
| GC Percentage | 50.61 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/785/GCA_000466785.3_ASM46678v3 | ||
| CDS | 2325 | ||
| Genes | 2431 | ||
| mRNA | 2431 | ||
| misc RNA | 31 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.41 % | ||
| CheckM Completeness | 95.35 % | ||
| CheckM Contamination | 6.99 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46678v3 |
| GenBank Assembly Accession | GCA_000466785.3 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000466785.3 [NCBI] |
| BioSample | SAMN02314197 [NCBI] |
| BioProject | PRJNA213970 [NCBI] |
| Submitter | Kingston University |
| Submission Date | 2013-08-08T18:12:02.590 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1381124 |
| Isolation Source | milk from female |
| Geo Location | Russia |
