Genome Meta Information: Corynebacterium pseudodiphtheriticum 090104 (GCA_000466825.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000466825.2 | ||
| HOMD Taxon-ID | HMT-0060 | ||
| Species Name (in use by HOMD) | Corynebacterium pseudodiphtheriticum | ||
| Organism Name (as deposited) | HMT-060 Corynebacterium pseudodiphtheriticum 090104 | ||
| Strain or Isolate | 090104 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium pseudodiphtheriticum |
||
| Sequencing Technology | IonTorrent | ||
| Genome Coverage | 25.47 | ||
| Contigs |
|
||
| Total Sequence Length | 2,328,061 (bp) | ||
| GC Percentage | 55.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/825/GCA_000466825.2_ASM46682v2 | ||
| CDS | 2231 | ||
| Genes | 2290 | ||
| mRNA | 2290 | ||
| misc RNA | 6 | ||
| rRNA | 5 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.41 % | ||
| CheckM Completeness | 87.75 % | ||
| CheckM Contamination | 0.46 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46682v2 |
| GenBank Assembly Accession | GCA_000466825.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000466825.2 [NCBI] |
| BioSample | SAMN02298815 [NCBI] |
| BioProject | PRJNA213995 [NCBI] |
| Submitter | Kingston Uniiversity |
| Submission Date | 2013-08-01T15:34:10.413 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AVFF01 |
| NCBI TaxID | 1381111 |
| Isolation Source | healthy person |
| Geo Location | Russia |
