Genome Meta Information: Porphyromonas sp. HMT-278 W7784 (GCA_000467855.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000467855.2 | ||
| HOMD Taxon-ID | HMT-0278 | ||
| Species Name (in use by HOMD) | Porphyromonas sp. HMT-278 | ||
| Organism Name (as deposited) | HMT-278 Porphyromonas sp. HMT-278 W7784 | ||
| Strain or Isolate | W7784 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas sp000467855 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 181 | ||
| Contigs |
|
||
| Total Sequence Length | 2,158,216 (bp) | ||
| GC Percentage | 55.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/855/GCA_000467855.2_ASM46785v2 | ||
| CDS | 1659 | ||
| Genes | 1719 | ||
| mRNA | 1719 | ||
| misc RNA | 7 | ||
| rRNA | 5 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.58 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46785v2 |
| GenBank Assembly Accession | GCA_000467855.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000467855.2 [NCBI] |
| BioSample | SAMN02436880 [NCBI] |
| BioProject | PRJNA173940 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:58.023 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWUX01 |
| NCBI TaxID | 1227272 |
| Isolation Source | dental plaque biofilm of the third molar |
| Geo Location | Finland |
