Genome Meta Information: Leptotrichia wadei F0279 (GCA_000469405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000469405.1 | ||
| HOMD Taxon-ID | HMT-0222 | ||
| Species Name (in use by HOMD) | Leptotrichia wadei | ||
| Organism Name (as deposited) | HMT-222 Leptotrichia wadei F0279 | ||
| Strain or Isolate | F0279 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia wadei |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 169 | ||
| Contigs |
|
||
| Total Sequence Length | 2,353,455 (bp) | ||
| GC Percentage | 29.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/405/GCA_000469405.1_ASM46940v1 | ||
| CDS | 2159 | ||
| Genes | 2205 | ||
| mRNA | 2205 | ||
| misc RNA | 15 | ||
| rRNA | 4 | ||
| tRNA | 26 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.44 % | ||
| CheckM Completeness | 99.7 % | ||
| CheckM Contamination | 0.35 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46940v1 |
| GenBank Assembly Accession | GCA_000469405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000469405.1 [NCBI] |
| BioSample | SAMN02436884 [NCBI] |
| BioProject | PRJNA53015 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:58.240 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWVM01 |
| NCBI TaxID | 888055 |
| Isolation Source | supragingival plaque biofilm of a molar |
| Geo Location | USA |
