Genome Meta Information: Pseudoleptotrichia sp. HMT-215 W9775 (GCA_000469505.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000469505.1 | ||
| HOMD Taxon-ID | HMT-0215 | ||
| Species Name (in use by HOMD) | Pseudoleptotrichia sp. HMT-215 | ||
| Organism Name (as deposited) | HMT-215 Pseudoleptotrichia sp. HMT-215 W9775 | ||
| Strain or Isolate | W9775 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A; s__Leptotrichia_A sp000469505 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 173 | ||
| Contigs |
|
||
| Total Sequence Length | 2,308,492 (bp) | ||
| GC Percentage | 31.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/505/GCA_000469505.1_ASM46950v1 | ||
| CDS | 2139 | ||
| Genes | 2196 | ||
| mRNA | 2196 | ||
| misc RNA | 19 | ||
| rRNA | 3 | ||
| tRNA | 34 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.96 % | ||
| CheckM Contamination | 3.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46950v1 |
| GenBank Assembly Accession | GCA_000469505.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000469505.1 [NCBI] |
| BioSample | SAMN02436816 [NCBI] |
| BioProject | PRJNA198887 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:54.380 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWVR01 |
| NCBI TaxID | 1321779 |
| Isolation Source | oral cavity- mouth |
| Geo Location | |
