Taxon Table | Genome Table
Genome Meta Information:
Leptotrichia
sp. HMT-225
F0581 (GCA_000469525.1)
| HOMD Genome-ID |
GCA_000469525.1
|
| HOMD Taxon-ID |
HMT-0225
|
| Species Name (in use by HOMD) |
Leptotrichia sp. HMT-225
|
| Organism Name (as deposited) |
HMT-225 Leptotrichia sp. HMT-225 F0581
|
| Strain or Isolate |
F0581
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;
s__Leptotrichia massiliensis |
| Sequencing Technology |
Illumina
|
| Genome Coverage |
166
|
| Contigs |
Number of Contigs: 174
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,400,083 (bp) |
| GC Percentage |
29.68
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/525/GCA_000469525.1_ASM46952v1
|
| CDS |
2225
|
| Genes |
2267
|
| mRNA |
2267
|
| misc RNA |
14
|
| rRNA |
3
|
| tRNA |
24
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
98.51 %
|
| CheckM Contamination |
0.56 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM46952v1
|
| GenBank Assembly Accession |
GCA_000469525.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000469525.1
[NCBI]
|
| BioSample |
SAMN02436812
[NCBI]
|
| BioProject |
PRJNA198878
[NCBI]
|
| Submitter |
Washington University
|
| Submission Date |
2013-12-04T15:03:54.170
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
AWVS01
|
| NCBI TaxID |
1321774
|
| Isolation Source |
oral cavity- mouth
|
| Geo Location |
|
