Genome Meta Information: Oribacterium sp. HMT-078 F0263 (GCA_000469565.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000469565.1 | ||
| HOMD Taxon-ID | HMT-0078 | ||
| Species Name (in use by HOMD) | Oribacterium sp. HMT-078 | ||
| Organism Name (as deposited) | HMT-078 Oribacterium sp. HMT-078 F0263 | ||
| Strain or Isolate | F0263 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium; s__Oribacterium sp000160135 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 148 | ||
| Contigs |
|
||
| Total Sequence Length | 2,694,758 (bp) | ||
| GC Percentage | 54.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/565/GCA_000469565.1_ASM46956v1 | ||
| CDS | 2336 | ||
| Genes | 2436 | ||
| mRNA | 2436 | ||
| misc RNA | 50 | ||
| rRNA | 2 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.75 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46956v1 |
| GenBank Assembly Accession | GCA_000469565.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000469565.1 [NCBI] |
| BioSample | SAMN02436879 [NCBI] |
| BioProject | PRJNA198889 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:57.973 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWVU01 |
| NCBI TaxID | 1321782 |
| Isolation Source | oral cavity- mouth |
| Geo Location | |
