Genome Meta Information: Rhodobacter capsulatus DE442 (GCA_000505785.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000505785.1 | ||
| HOMD Taxon-ID | HMT-0857 | ||
| Species Name (in use by HOMD) | Rhodobacter capsulatus | ||
| Organism Name (as deposited) | HMT-857 Rhodobacter capsulatus DE442 | ||
| Strain or Isolate | DE442 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter; s__Rhodobacter capsulatus_B |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 198 | ||
| Contigs |
|
||
| Total Sequence Length | 3,760,501 (bp) | ||
| GC Percentage | 66.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/505/785/GCA_000505785.1_ASM50578v1 | ||
| CDS | 3542 | ||
| Genes | 3627 | ||
| mRNA | 3627 | ||
| misc RNA | 27 | ||
| rRNA | 3 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.12 % | ||
| CheckM Completeness | 98.87 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM50578v1 |
| GenBank Assembly Accession | GCA_000505785.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000505785.1 [NCBI] |
| BioSample | SAMN02471349 [NCBI] |
| BioProject | PRJNA225629 [NCBI] |
| Submitter | University of British Columbia |
| Submission Date | 2013-12-19T13:34:59.607 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AYPR01 |
| NCBI TaxID | 1415160 |
| Isolation Source | |
| Geo Location | USA |
