Genome Meta Information: Rhodobacter capsulatus R121 (GCA_000506565.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000506565.2 | ||
| HOMD Taxon-ID | HMT-0857 | ||
| Species Name (in use by HOMD) | Rhodobacter capsulatus | ||
| Organism Name (as deposited) | HMT-857 Rhodobacter capsulatus R121 | ||
| Strain or Isolate | R121 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter; s__Rhodobacter capsulatus_B |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 212 | ||
| Contigs |
|
||
| Total Sequence Length | 3,760,694 (bp) | ||
| GC Percentage | 66.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/506/565/GCA_000506565.2_ASM50656v2 | ||
| CDS | 3534 | ||
| Genes | 3619 | ||
| mRNA | 3619 | ||
| misc RNA | 27 | ||
| rRNA | 3 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.12 % | ||
| CheckM Completeness | 98.55 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM50656v2 |
| GenBank Assembly Accession | GCA_000506565.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000506565.2 [NCBI] |
| BioSample | SAMN02471351 [NCBI] |
| BioProject | PRJNA225632 [NCBI] |
| Submitter | University of British Columbia |
| Submission Date | 2013-12-19T13:34:59.720 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AYQC01 |
| NCBI TaxID | 1415163 |
| Isolation Source | |
| Geo Location | |
