Genome Meta Information: Listeria monocytogenes FSL F6-684 (GCA_000525815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000525815.1 | ||
| HOMD Taxon-ID | HMT-0825 | ||
| Species Name (in use by HOMD) | Listeria monocytogenes | ||
| Organism Name (as deposited) | HMT-825 Listeria monocytogenes FSL F6-684 | ||
| Strain or Isolate | FSL F6-684 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria; s__Listeria monocytogenes |
||
| Sequencing Technology | IonTorrent | ||
| Genome Coverage | 45.96 | ||
| Contigs |
|
||
| Total Sequence Length | 2,845,956 (bp) | ||
| GC Percentage | 37.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/525/815/GCA_000525815.1_LmonocytogenesType | ||
| CDS | 3094 | ||
| Genes | 3293 | ||
| mRNA | 3293 | ||
| misc RNA | 127 | ||
| rRNA | 9 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.95 % | ||
| CheckM Completeness | 81.17 % | ||
| CheckM Contamination | 0.21 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | LmonocytogenesType |
| GenBank Assembly Accession | GCA_000525815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000525815.1 [NCBI] |
| BioSample | SAMN02742052 [NCBI] |
| BioProject | PRJNA184060 [NCBI] |
| Submitter | Cornell University |
| Submission Date | 2014-05-01T14:21:04.816 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AODC01 |
| NCBI TaxID | 1273540 |
| Isolation Source | |
| Geo Location | |
