Genome Meta Information: Porphyromonas catoniae ATCC 51270 (GCA_000565015.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000565015.1 | ||
| HOMD Taxon-ID | HMT-0283 | ||
| Species Name (in use by HOMD) | Porphyromonas catoniae | ||
| Organism Name (as deposited) | HMT-283 Porphyromonas catoniae ATCC 51270 | ||
| Strain or Isolate | ATCC 51270 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas catoniae |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 308 | ||
| Contigs |
|
||
| Total Sequence Length | 2,040,170 (bp) | ||
| GC Percentage | 50.99 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/565/015/GCA_000565015.1_PcatATCC51270v1.0 | ||
| CDS | 1626 | ||
| Genes | 1683 | ||
| mRNA | 1683 | ||
| misc RNA | 6 | ||
| rRNA | 4 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 95.25 % | ||
| CheckM Contamination | 0.29 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | PcatATCC51270v1.0 |
| GenBank Assembly Accession | GCA_000565015.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000565015.1 [NCBI] |
| BioSample | SAMN02344579 [NCBI] |
| BioProject | PRJNA52993 [NCBI] |
| Submitter | Baylor College of Medicine |
| Submission Date | 2013-09-04T11:05:14.870 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JDFF01 |
| NCBI TaxID | 887901 |
| Isolation Source | |
| Geo Location | |
