Genome Meta Information: Aggregatibacter actinomycetemcomitans HK1651 (GCA_000604045.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000604045.1 | ||
| HOMD Taxon-ID | HMT-0531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans HK1651 | ||
| Strain or Isolate | HK1651 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | Sanger | ||
| Genome Coverage | 9.9 | ||
| Contigs |
|
||
| Total Sequence Length | 2,105,503 (bp) | ||
| GC Percentage | 44.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/604/045/GCA_000604045.1_ASM60404v1 | ||
| CDS | 1996 | ||
| Genes | 2130 | ||
| mRNA | 2130 | ||
| misc RNA | 60 | ||
| rRNA | 19 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.1 % | ||
| CheckM Completeness | 96.7 % | ||
| CheckM Contamination | 0.11 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM60404v1 |
| GenBank Assembly Accession | GCA_000604045.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000604045.1 [NCBI] |
| BioSample | SAMN02673418 [NCBI] |
| BioProject | PRJNA239703 [NCBI] |
| Submitter | Oklahoma University Health Sciences Center |
| Submission Date | 2014-03-05T14:10:43.520 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 272556 |
| Isolation Source | periodontal plaque |
| Geo Location | Denmark |
