Genome Meta Information: Porphyromonas gingivalis HG66 (GCA_000739415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000739415.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis HG66 | ||
| Strain or Isolate | HG66 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,441,780 (bp) | ||
| GC Percentage | 48.11 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/739/415/GCA_000739415.1_ASM73941v1 | ||
| CDS | 2048 | ||
| Genes | 2130 | ||
| mRNA | 2130 | ||
| misc RNA | 16 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.79 % | ||
| CheckM Completeness | 98.18 % | ||
| CheckM Contamination | 1.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 4 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM73941v1 |
| GenBank Assembly Accession | GCA_000739415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000739415.1 [NCBI] |
| BioSample | SAMN02732406 [NCBI] |
| BioProject | PRJNA245225 [NCBI] |
| Submitter | University of Louisville |
| Submission Date | 2014-04-23T15:45:38.930 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 837 |
| Isolation Source | |
| Geo Location | unknown |
