Genome Meta Information: Bifidobacterium subtile LMG 11597 (GCA_000741775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000741775.1 | ||
| HOMD Taxon-ID | HMT-0890 | ||
| Species Name (in use by HOMD) | Bifidobacterium subtile | ||
| Organism Name (as deposited) | HMT-890 Bifidobacterium subtile LMG 11597 | ||
| Strain or Isolate | LMG 11597 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium subtile |
||
| Sequencing Technology | Ion Torrent | ||
| Genome Coverage | 123.7 | ||
| Contigs |
|
||
| Total Sequence Length | 2,790,088 (bp) | ||
| GC Percentage | 60.92 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/741/775/GCA_000741775.1_Bifsub | ||
| CDS | 2273 | ||
| Genes | 2341 | ||
| mRNA | 2341 | ||
| misc RNA | 17 | ||
| rRNA | 2 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 95.61 % | ||
| CheckM Contamination | 2.76 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Bifsub |
| GenBank Assembly Accession | GCA_000741775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000741775.1 [NCBI] |
| BioSample | SAMN02673455 [NCBI] |
| BioProject | PRJNA239867 [NCBI] |
| Submitter | University of Parma |
| Submission Date | 2014-03-05T15:00:55.310 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JGZR01 |
| NCBI TaxID | 77635 |
| Isolation Source | Sewage |
| Geo Location | missing |
