Taxon Table | Genome Table
Genome Meta Information:
Prevotella
bivia
DNF00188 (GCA_000759045.1)
| HOMD Genome-ID |
GCA_000759045.1
|
| HOMD Taxon-ID |
HMT-0556
|
| Species Name (in use by HOMD) |
Prevotella bivia
|
| Organism Name (as deposited) |
HMT-556 Prevotella bivia DNF00188
|
| Strain or Isolate |
DNF00188
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella bivia |
| Sequencing Technology |
Illumina
|
| Genome Coverage |
69.82
|
| Contigs |
Number of Contigs: 158
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,527,024 (bp) |
| GC Percentage |
39.85
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/045/GCA_000759045.1_04_NF_x40_HMP1651v01
|
| CDS |
2143
|
| Genes |
2193
|
| mRNA |
2193
|
| misc RNA |
7
|
| rRNA |
3
|
| tRNA |
39
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.91 %
|
| CheckM Completeness |
87.81 %
|
| CheckM Contamination |
5.47 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
Ambiguous
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
04_NF_x40_HMP1651v01
|
| GenBank Assembly Accession |
GCA_000759045.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000759045.1
[NCBI]
|
| BioSample |
SAMN02850947
[NCBI]
|
| BioProject |
PRJNA187523
[NCBI]
|
| Submitter |
JCVI
|
| Submission Date |
2014-06-11T15:29:55.043
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JRNF01
|
| NCBI TaxID |
1287476
|
| Isolation Source |
vagina
|
| Geo Location |
missing
|
