Genome Meta Information: Prevotella histicola DNF00424 (GCA_000759075.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000759075.1 | ||
| HOMD Taxon-ID | HMT-0298 | ||
| Species Name (in use by HOMD) | Prevotella histicola | ||
| Organism Name (as deposited) | HMT-298 Prevotella histicola DNF00424 | ||
| Strain or Isolate | DNF00424 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella histicola |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 80.55 | ||
| Contigs |
|
||
| Total Sequence Length | 3,059,956 (bp) | ||
| GC Percentage | 41.17 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/075/GCA_000759075.1_04_NF40_HMP2132v01 | ||
| CDS | 2532 | ||
| Genes | 2611 | ||
| mRNA | 2611 | ||
| misc RNA | 24 | ||
| rRNA | 6 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.9 % | ||
| CheckM Completeness | 98.93 % | ||
| CheckM Contamination | 0.53 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 04_NF40_HMP2132v01 |
| GenBank Assembly Accession | GCA_000759075.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000759075.1 [NCBI] |
| BioSample | SAMN02850967 [NCBI] |
| BioProject | PRJNA219666 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2014-06-11T15:29:56.660 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JRNJ01 |
| NCBI TaxID | 1236504 |
| Isolation Source | vagina |
| Geo Location | missing |
