Taxon Table | Genome Table
Genome Meta Information:
Prevotella
bivia
DNF00650 (GCA_000759165.1)
| HOMD Genome-ID |
GCA_000759165.1
|
| HOMD Taxon-ID |
HMT-0556
|
| Species Name (in use by HOMD) |
Prevotella bivia
|
| Organism Name (as deposited) |
HMT-556 Prevotella bivia DNF00650
|
| Strain or Isolate |
DNF00650
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella bivia |
| Sequencing Technology |
Illumina
|
| Genome Coverage |
81.12
|
| Contigs |
Number of Contigs: 173
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,408,181 (bp) |
| GC Percentage |
39.74
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/165/GCA_000759165.1_04_NF40_HMP2136v01
|
| CDS |
2060
|
| Genes |
2117
|
| mRNA |
2117
|
| misc RNA |
12
|
| rRNA |
3
|
| tRNA |
41
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.94 %
|
| CheckM Completeness |
86.76 %
|
| CheckM Contamination |
3.73 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
Ambiguous
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
04_NF40_HMP2136v01
|
| GenBank Assembly Accession |
GCA_000759165.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000759165.1
[NCBI]
|
| BioSample |
SAMN02850971
[NCBI]
|
| BioProject |
PRJNA219670
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2014-06-11T15:29:57.103
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JRNM01
|
| NCBI TaxID |
1401072
|
| Isolation Source |
vagina
|
| Geo Location |
missing
|
