Genome Meta Information: Rothia aeria C6D (GCA_000763765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000763765.1 | ||
| HOMD Taxon-ID | HMT-0188 | ||
| Species Name (in use by HOMD) | Rothia aeria | ||
| Organism Name (as deposited) | HMT-188 Rothia aeria C6D | ||
| Strain or Isolate | C6D | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia aeria |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 59.39 | ||
| Contigs |
|
||
| Total Sequence Length | 2,639,435 (bp) | ||
| GC Percentage | 56.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/763/765/GCA_000763765.1_ASM76376v1 | ||
| CDS | 2319 | ||
| Genes | 2388 | ||
| mRNA | 2388 | ||
| misc RNA | 13 | ||
| rRNA | 4 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.55 % | ||
| CheckM Completeness | 98.97 % | ||
| CheckM Contamination | 1.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM76376v1 |
| GenBank Assembly Accession | GCA_000763765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000763765.1 [NCBI] |
| BioSample | SAMN02954007 [NCBI] |
| BioProject | PRJNA246626 [NCBI] |
| Submitter | University of Malaya |
| Submission Date | 2014-08-07T09:51:48.990 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JPVS01 |
| NCBI TaxID | 172042 |
| Isolation Source | sputum |
| Geo Location | Malaysia: Kuala Lumpur |
