Genome Meta Information: Lacticaseibacillus paracasei JCM 8130 (GCA_000829035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000829035.1 | ||
| HOMD Taxon-ID | HMT-0716 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus paracasei | ||
| Organism Name (as deposited) | HMT-716 Lacticaseibacillus paracasei JCM 8130 | ||
| Strain or Isolate | JCM 8130 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus paracasei |
||
| Sequencing Technology | 454FLX; 3730xl | ||
| Genome Coverage | 29.6 | ||
| Contigs |
|
||
| Total Sequence Length | 3,017,804 (bp) | ||
| GC Percentage | 46.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/829/035/GCA_000829035.1_ASM82903v1 | ||
| CDS | 2945 | ||
| Genes | 3055 | ||
| mRNA | 3055 | ||
| misc RNA | 32 | ||
| rRNA | 15 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.71 % | ||
| CheckM Contamination | 4.74 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM82903v1 |
| GenBank Assembly Accession | GCA_000829035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000829035.1 [NCBI] |
| BioSample | SAMD00010723 [NCBI] |
| BioProject | PRJDB478 [NCBI] |
| Submitter | Kyushu University |
| Submission Date | 2014-03-26T08:12:23.606 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 47714 |
| Isolation Source | |
| Geo Location | |
