Genome Meta Information: Lactococcus lactis JCM 5805 (GCA_000835975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000835975.1 | ||
| HOMD Taxon-ID | HMT-0804 | ||
| Species Name (in use by HOMD) | Lactococcus lactis | ||
| Organism Name (as deposited) | HMT-804 Lactococcus lactis JCM 5805 | ||
| Strain or Isolate | JCM 5805 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus; s__Lactococcus lactis |
||
| Sequencing Technology | 454 GS FLX | ||
| Genome Coverage | 60 | ||
| Contigs |
|
||
| Total Sequence Length | 2,545,792 (bp) | ||
| GC Percentage | 35.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/835/975/GCA_000835975.1_ASM83597v1 | ||
| CDS | 2568 | ||
| Genes | 2668 | ||
| mRNA | 2668 | ||
| misc RNA | 43 | ||
| rRNA | 4 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 95.7 % | ||
| CheckM Contamination | 0.94 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM83597v1 |
| GenBank Assembly Accession | GCA_000835975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000835975.1 [NCBI] |
| BioSample | SAMD00023525 [NCBI] |
| BioProject | PRJDB3260 [NCBI] |
| Submitter | Kirin |
| Submission Date | 2015-01-27T09:49:31.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | BBSI01 |
| NCBI TaxID | 1360 |
| Isolation Source | |
| Geo Location | NA |
