Taxon Table | Genome Table
Genome Meta Information:
Prevotella
intermedia
ZT (GCA_000955645.1)
| HOMD Genome-ID |
GCA_000955645.1
|
| HOMD Taxon-ID |
HMT-0643
|
| Species Name (in use by HOMD) |
Prevotella intermedia
|
| Organism Name (as deposited) |
HMT-643 Prevotella intermedia ZT
|
| Strain or Isolate |
ZT
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella intermedia |
| Sequencing Technology |
454
|
| Genome Coverage |
65
|
| Contigs |
Number of Contigs: 168
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,790,340 (bp) |
| GC Percentage |
43.33
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/955/645/GCA_000955645.1_PiZT
|
| CDS |
2392
|
| Genes |
2454
|
| mRNA |
2454
|
| misc RNA |
10
|
| rRNA |
5
|
| tRNA |
46
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.31 %
|
| CheckM Completeness |
89.94 %
|
| CheckM Contamination |
10.22 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
PiZT
|
| GenBank Assembly Accession |
GCA_000955645.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000955645.1
[NCBI]
|
| BioSample |
SAMN02212661
[NCBI]
|
| BioProject |
PRJNA208776
[NCBI]
|
| Submitter |
Bio-X Institutes, Shanghai Jiao Tong University
|
| Submission Date |
2013-06-24T22:30:11.077
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
ATMK01
|
| NCBI TaxID |
1347790
|
| Isolation Source |
root canal
|
| Geo Location |
China: Shanghai
|
