Genome Meta Information: Sneathia vaginalis SN35 (GCA_000973085.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000973085.1 | ||
| HOMD Taxon-ID | HMT-0844 | ||
| Species Name (in use by HOMD) | Sneathia vaginalis | ||
| Organism Name (as deposited) | HMT-844 Sneathia vaginalis SN35 | ||
| Strain or Isolate | SN35 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia; s__Sneathia vaginalis |
||
| Sequencing Technology | Sanger dideoxy sequencing; 454 | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 1,330,224 (bp) | ||
| GC Percentage | 28.43 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/973/085/GCA_000973085.1_ASM97308v1 | ||
| CDS | 1271 | ||
| Genes | 1324 | ||
| mRNA | 1324 | ||
| misc RNA | 10 | ||
| rRNA | 6 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 92.42 % | ||
| CheckM Contamination | 0.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM97308v1 |
| GenBank Assembly Accession | GCA_000973085.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000973085.1 [NCBI] |
| BioSample | SAMN03380727 [NCBI] |
| BioProject | PRJNA276758 [NCBI] |
| Submitter | Vaginal Human Microbiome Consortium |
| Submission Date | 2015-03-01T17:58:49.150 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 187101 |
| Isolation Source | amniotic fluid |
| Geo Location | USA |
