Taxon Table | Genome Table
Genome Meta Information:
Tannerella
forsythia
ATCC 43037 (GCA_001006485.1)
| HOMD Genome-ID |
GCA_001006485.1
|
| HOMD Taxon-ID |
HMT-0613
|
| Species Name (in use by HOMD) |
Tannerella forsythia
|
| Organism Name (as deposited) |
HMT-613 Tannerella forsythia ATCC 43037
|
| Strain or Isolate |
ATCC 43037
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;
s__Tannerella forsythia |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
190
|
| Contigs |
Number of Contigs: 141
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
3,281,748 (bp) |
| GC Percentage |
47.14
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/006/485/GCA_001006485.1_ASM100648v1
|
| CDS |
2729
|
| Genes |
2805
|
| mRNA |
2805
|
| misc RNA |
26
|
| rRNA |
5
|
| tRNA |
44
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
99.99 %
|
| CheckM Completeness |
97.8 %
|
| CheckM Contamination |
2.48 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM100648v1
|
| GenBank Assembly Accession |
GCA_001006485.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_001006485.1
[NCBI]
|
| BioSample |
SAMN03176940
[NCBI]
|
| BioProject |
PRJNA266975
[NCBI]
|
| Submitter |
BOKU Vienna
|
| Submission Date |
2014-11-12T11:21:33.420
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JUET01
|
| NCBI TaxID |
28112
|
| Isolation Source |
Human periodontal pocket
|
| Geo Location |
USA
|
