Genome Meta Information: Haemophilus haemolyticus 1P26 (GCA_001008215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001008215.1 | ||
| HOMD Taxon-ID | HMT-0851 | ||
| Species Name (in use by HOMD) | Haemophilus haemolyticus | ||
| Organism Name (as deposited) | HMT-851 Haemophilus haemolyticus 1P26 | ||
| Strain or Isolate | 1P26 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus sp000242295 |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 6 | ||
| Contigs |
|
||
| Total Sequence Length | 1,869,699 (bp) | ||
| GC Percentage | 38.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/008/215/GCA_001008215.1_ASM100821v1 | ||
| CDS | 1795 | ||
| Genes | 1882 | ||
| mRNA | 1882 | ||
| misc RNA | 31 | ||
| rRNA | 7 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.66 % | ||
| CheckM Completeness | 94.36 % | ||
| CheckM Contamination | 0.72 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM100821v1 |
| GenBank Assembly Accession | GCA_001008215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001008215.1 [NCBI] |
| BioSample | SAMN03573808 [NCBI] |
| BioProject | PRJNA282677 [NCBI] |
| Submitter | University of Iowa |
| Submission Date | 2015-04-29T14:11:05.177 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LCTI01 |
| NCBI TaxID | 726 |
| Isolation Source | nasopharynx |
| Geo Location | USA: NY, Buffalo |
