Genome Meta Information: Haemophilus haemolyticus 3P5 (GCA_001008225.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001008225.1 | ||
| HOMD Taxon-ID | HMT-0851 | ||
| Species Name (in use by HOMD) | Haemophilus haemolyticus | ||
| Organism Name (as deposited) | HMT-851 Haemophilus haemolyticus 3P5 | ||
| Strain or Isolate | 3P5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus haemolyticus_M |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 20 | ||
| Contigs |
|
||
| Total Sequence Length | 1,836,392 (bp) | ||
| GC Percentage | 38.44 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/008/225/GCA_001008225.1_ASM100822v1 | ||
| CDS | 1713 | ||
| Genes | 1806 | ||
| mRNA | 1806 | ||
| misc RNA | 40 | ||
| rRNA | 4 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.66 % | ||
| CheckM Completeness | 95.12 % | ||
| CheckM Contamination | 1.52 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM100822v1 |
| GenBank Assembly Accession | GCA_001008225.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001008225.1 [NCBI] |
| BioSample | SAMN03573809 [NCBI] |
| BioProject | PRJNA282678 [NCBI] |
| Submitter | University of Iowa |
| Submission Date | 2015-04-29T14:11:07.230 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LCTJ01 |
| NCBI TaxID | 726 |
| Isolation Source | nasopharynx |
| Geo Location | USA: NY, Buffalo |
