Genome Meta Information: Ligilactobacillus salivarius Ren (GCA_001011095.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001011095.1 | ||
| HOMD Taxon-ID | HMT-0756 | ||
| Species Name (in use by HOMD) | Ligilactobacillus salivarius | ||
| Organism Name (as deposited) | HMT-756 Ligilactobacillus salivarius Ren | ||
| Strain or Isolate | Ren | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus; s__Ligilactobacillus salivarius |
||
| Sequencing Technology | Illumina; PacBio | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 1,978,364 (bp) | ||
| GC Percentage | 33.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/011/095/GCA_001011095.1_ASM101109v1 | ||
| CDS | 1907 | ||
| Genes | 2039 | ||
| mRNA | 2039 | ||
| misc RNA | 33 | ||
| rRNA | 21 | ||
| tRNA | 77 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.06 % | ||
| CheckM Completeness | 97.63 % | ||
| CheckM Contamination | 0.85 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM101109v1 |
| GenBank Assembly Accession | GCA_001011095.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001011095.1 [NCBI] |
| BioSample | SAMN02584770 [NCBI] |
| BioProject | PRJNA247452 [NCBI] |
| Submitter | China Agricultural University |
| Submission Date | 2014-01-14T22:27:05.120 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1194971 |
| Isolation Source | human feces |
| Geo Location | China: Guangxi |
