Genome Meta Information: Staphylococcus capitis AYP1020 (GCA_001028645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001028645.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis AYP1020 | ||
| Strain or Isolate | AYP1020 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Pacific Biosciences | ||
| Genome Coverage | 164 | ||
| Contigs |
|
||
| Total Sequence Length | 2,503,265 (bp) | ||
| GC Percentage | 32.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/028/645/GCA_001028645.1_ASM102864v1 | ||
| CDS | 2369 | ||
| Genes | 2498 | ||
| mRNA | 2498 | ||
| misc RNA | 47 | ||
| rRNA | 19 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.67 % | ||
| CheckM Completeness | 99.14 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM102864v1 |
| GenBank Assembly Accession | GCA_001028645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001028645.1 [NCBI] |
| BioSample | SAMN02739579 [NCBI] |
| BioProject | PRJNA232502 [NCBI] |
| Submitter | Department of Microbiology, Monash University |
| Submission Date | 2014-04-28T21:35:02.280 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 72758 |
| Isolation Source | blood |
| Geo Location | Australia |
