Genome Meta Information: Parascardovia denticolens JCM 12538 (GCA_001042675.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001042675.1 | ||
| HOMD Taxon-ID | HMT-0586 | ||
| Species Name (in use by HOMD) | Parascardovia denticolens | ||
| Organism Name (as deposited) | HMT-586 Parascardovia denticolens JCM 12538 | ||
| Strain or Isolate | JCM 12538 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia; s__Scardovia denticolens |
||
| Sequencing Technology | 3730xl | ||
| Genome Coverage | 10.6 | ||
| Contigs |
|
||
| Total Sequence Length | 1,890,857 (bp) | ||
| GC Percentage | 58.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/675/GCA_001042675.1_ASM104267v1 | ||
| CDS | 1523 | ||
| Genes | 1578 | ||
| mRNA | 1578 | ||
| misc RNA | 5 | ||
| rRNA | 4 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.83 % | ||
| CheckM Contamination | 0.17 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM104267v1 |
| GenBank Assembly Accession | GCA_001042675.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001042675.1 [NCBI] |
| BioSample | SAMD00061048 [NCBI] |
| BioProject | PRJDB64 [NCBI] |
| Submitter | Graduate School of Frontier Sciences, University of Tokyo |
| Submission Date | 2016-09-28T01:02:05.100 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 864564 |
| Isolation Source | |
| Geo Location | |
