Genome Meta Information: Scardovia inopinata JCM 12537 (GCA_001042695.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001042695.1 | ||
| HOMD Taxon-ID | HMT-0642 | ||
| Species Name (in use by HOMD) | Scardovia inopinata | ||
| Organism Name (as deposited) | HMT-642 Scardovia inopinata JCM 12537 | ||
| Strain or Isolate | JCM 12537 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia; s__Scardovia inopinata |
||
| Sequencing Technology | 3730xl | ||
| Genome Coverage | 10.7 | ||
| Contigs |
|
||
| Total Sequence Length | 1,797,862 (bp) | ||
| GC Percentage | 48.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/695/GCA_001042695.1_ASM104269v1 | ||
| CDS | 1460 | ||
| Genes | 1522 | ||
| mRNA | 1522 | ||
| misc RNA | 11 | ||
| rRNA | 4 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.64 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM104269v1 |
| GenBank Assembly Accession | GCA_001042695.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001042695.1 [NCBI] |
| BioSample | SAMD00061049 [NCBI] |
| BioProject | PRJDB65 [NCBI] |
| Submitter | Graduate School of Frontier Sciences, University of Tokyo |
| Submission Date | 2016-09-28T01:02:06.076 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1150468 |
| Isolation Source | |
| Geo Location | |
