Genome Meta Information: Haemophilus ducreyi CIP 54.2 (GCA_001043455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001043455.1 | ||
| HOMD Taxon-ID | HMT-0821 | ||
| Species Name (in use by HOMD) | Haemophilus ducreyi | ||
| Organism Name (as deposited) | HMT-821 Haemophilus ducreyi CIP 54.2 | ||
| Strain or Isolate | CIP 54.2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B; s__Haemophilus_B ducreyi |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 1,557,754 (bp) | ||
| GC Percentage | 39.07 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/043/455/GCA_001043455.1_ASM104345v1 | ||
| CDS | 1508 | ||
| Genes | 1578 | ||
| mRNA | 1578 | ||
| misc RNA | 17 | ||
| rRNA | 0 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 94.72 % | ||
| CheckM Contamination | 0.59 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM104345v1 |
| GenBank Assembly Accession | GCA_001043455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001043455.1 [NCBI] |
| BioSample | SAMN03271828 [NCBI] |
| BioProject | PRJNA270894 [NCBI] |
| Submitter | Indiana University School of Medicine |
| Submission Date | 2014-12-21T14:52:30.476 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 730 |
| Isolation Source | |
| Geo Location | not collected |
