Genome Meta Information: Fannyhessea vaginae 44061 (GCA_001049775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001049775.1 | ||
| HOMD Taxon-ID | HMT-0814 | ||
| Species Name (in use by HOMD) | Fannyhessea vaginae | ||
| Organism Name (as deposited) | HMT-814 Fannyhessea vaginae 44061 | ||
| Strain or Isolate | 44061 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Fannyhessea; s__Fannyhessea vaginae |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 18 | ||
| Contigs |
|
||
| Total Sequence Length | 1,483,295 (bp) | ||
| GC Percentage | 42.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/049/775/GCA_001049775.1_ASM104977v1 | ||
| CDS | 1248 | ||
| Genes | 1306 | ||
| mRNA | 1306 | ||
| misc RNA | 8 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.76 % | ||
| CheckM Completeness | 95.36 % | ||
| CheckM Contamination | 2.64 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM104977v1 |
| GenBank Assembly Accession | GCA_001049775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001049775.1 [NCBI] |
| BioSample | SAMN03801594 [NCBI] |
| BioProject | PRJNA288564 [NCBI] |
| Submitter | Medical Diagnostic Laboratories |
| Submission Date | 2015-06-30T11:39:03.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LFWE01 |
| NCBI TaxID | 82135 |
| Isolation Source | Vaginal specimen |
| Geo Location | Sweden: Goteborg |
