Genome Meta Information: Listeria monocytogenes FDAARGOS_57 (GCA_001188045.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001188045.2 | ||
| HOMD Taxon-ID | HMT-0825 | ||
| Species Name (in use by HOMD) | Listeria monocytogenes | ||
| Organism Name (as deposited) | HMT-825 Listeria monocytogenes FDAARGOS_57 | ||
| Strain or Isolate | FDAARGOS_57 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria; s__Listeria monocytogenes_B |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 604.719 | ||
| Contigs |
|
||
| Total Sequence Length | 2,935,398 (bp) | ||
| GC Percentage | 38.0 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/188/045/GCA_001188045.2_ASM118804v2 | ||
| CDS | 2825 | ||
| Genes | 3011 | ||
| mRNA | 3011 | ||
| misc RNA | 100 | ||
| rRNA | 18 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.27 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM118804v2 |
| GenBank Assembly Accession | GCA_001188045.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001188045.2 [NCBI] |
| BioSample | SAMN03255437 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2014-12-08T12:29:29.690 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1639 |
| Isolation Source | water |
| Geo Location | USA: NY |
