Genome Meta Information: Pseudoleptotrichia sp. HMT-212 W10393 (GCA_001274535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001274535.1 | ||
| HOMD Taxon-ID | HMT-0212 | ||
| Species Name (in use by HOMD) | Pseudoleptotrichia sp. HMT-212 | ||
| Organism Name (as deposited) | HMT-212 Pseudoleptotrichia sp. HMT-212 W10393 | ||
| Strain or Isolate | W10393 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A; s__Leptotrichia_A sp001274535 |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 159 | ||
| Contigs |
|
||
| Total Sequence Length | 2,444,904 (bp) | ||
| GC Percentage | 31.41 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/274/535/GCA_001274535.1_ASM127453v1 | ||
| CDS | 2299 | ||
| Genes | 2373 | ||
| mRNA | 2373 | ||
| misc RNA | 15 | ||
| rRNA | 15 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.15 % | ||
| CheckM Contamination | 2.95 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM127453v1 |
| GenBank Assembly Accession | GCA_001274535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001274535.1 [NCBI] |
| BioSample | SAMN03976113 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2015-08-10T14:28:11.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 712357 |
| Isolation Source | Subgingival plaque, gingival sulcus |
| Geo Location | United Kingdom: London |
